Bioinformatics and Structural Biology Publications

Publications

  1. Singh, V. & Singh, D.D. (2008). Leishmania major: Genome analysis for identification of putative adhesin-like and other surface proteins. Exp. Parasitol. 118, 139-145. Pubmed
  2. Shankar R. Kataria B. Mukerji M. (2009). Finding Alu in primate genomes with AF-1. Bioinformation 3, 287-288 Pubmed
  3. Singh, DD (2009). Large gene families and targets for drug design. Biobytes  4, 19-21.
  4. Singh, DD (2009). Bioinformatics-Structural Biology interface. In Bioinformatics Applications in Life and Environmental Sciences(Fulekar, M.H., ed), Capital Publishing Company (jointly with Springer publishers), New Delhi, 25-33.
  5. Heikham R, Shankar R. (2010). Flanking region sequence information to refine microRNA target predictions. J Biosci. 35, 105-18. Pubmed
  6. Divya Nair, CG Suresh, D D Singh (2011) Purification, crystallization and preliminary X-ray characterization of an haemagglutinin from the seeds of Jatropha curcas. Acta Crystallogr Sect F Struct Biol Cryst Commun. 67, 1534-36 Pubmed  
  7. Nair, D., Singh, V., Yamaguchi, Y. and Singh, D.D. (2012). Jatropha curcas hemagglutinin is similar to a 2S albumin allergen from the same source and has unique sugar affinities. Planta 236, 1499-1505 Pubmed
  8. Shah KR, Patel DK, Pappachan A, Prabha CR, Singh DD.  (2015) Characterization of a Kunitz-type serine protease inhibitor from Solanum tuberosum having lectin activity. Int J Biol Macromol. 83;259-69. Pubmed

Poster Presentation

  1. Bandhopadhya, S., Singh, DD. Comparative structural analysis of MAPKs from humand and tritryps. EMBO lecture series, NCL Pune, November 9-14, 2008.
  2. Kataria B, Singh, DD. GluD, a program for calculating sugar distances in PDB files. EMBO lecture series, NCL Pune, November 9-14, 2008
  3. Radhey Shyam Kaushal, Singh D.D. Cloning and characterization of KMP-11, a LPG associated antigenic protein from Leishmania spp. BioWorld 2012 Proteins in Disease and Disorder;IIT-Delhi.December 10-12 , 2012.
  4. Patel D, Mangukia N, Singh D D. Gene ontology mapping, bioinformatics analysis and compilation of unique tritryp proteome;Indian Institute of Science, Banglore. January 8-11, 2013.
  5. Patel B, Patel D, Chauhan R, Singh D.D, Pappachan A. Xanthine Phosphoribosyltransferase (XPRT) A potential anti - Leishmanial drug target;Indian Institute of Science, Banglore. January 8-11, 2013.
  6. Patel B, Pappachan A. Cloning of a Hexokinase gene from Leishmania donovani;7th National level Science Symposium on Recent Trends in Science and Technology, Rajkot,February 23, 2014.
  7. Radhey Shyam Kaushal,Pappachan A, Singh D.D. Cloning and Expression of a unique protein having C-type lectin domain from Leishmania donovani. International Conference on Host-Pathogen Interactions (ICHPI); National Institute of Animal Biotechnology (NIAB), Hyderabad, India, July 12-15 , 2014.
  8. Manoj Kumar,Pappachan A, Singh D.D. Understanding the role of Proteophosphoglycan 3 (PPG3) in Leishmania donovani during host-pathogen interaction through structural characterization. International Conference on Host-Pathogen Interactions (ICHPI); National Institute of Animal Biotechnology (NIAB), Hyderabad, India, July 12-15 , 2014.
  9. Patel D, Pappachan A, Singh D.D. Expression, Purification and Structural Characterization of Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Lactobacillus acidophilus; International Symposium-cum-Workshop Frontiers of Structural Biology new advances in x-ray diffraction and cryo - electron microscopy,INSA, Regional Center for Biotechnology, New Delhi. December 15 - 17, 2014.
  10. Shah K, Pappachan A, Singh D.D. Cloning, purification and characterization of β Glucosidase Aggregating factor (BGAF) from Sorghum bicolor ; International Symposium-cum-Workshop Frontiers of Structural Biology new advances in x-ray diffraction and cryo - electron microscopy,INSA, Regional Center for Biotechnology, New Delhi. December 15 - 17, 2014.
  11. Patel B, Patel D,Singh D.D.,Pappachan A. Bioinformatic and Biophysical Characterization of Xanthine phosphoribosyltransferase (XPRT)-a potential drug target from Leishmania donovani; International Symposium-cum-Workshop Frontiers of Structural Biology new advances in x-ray diffraction and cryo - electron microscopy,INSA, Regional Center for Biotechnology, New Delhi. December 15 - 17, 2014.

Oral Presentation

  1. Vijay Singh “Leishmaina surface molecule: The search continue..”.Gujarat Science Congress 2012; M.S. University Baroda, February 26th,2012.
  2. Vijay Singh “ProtAnno: an open source online integrated tool for homology search”. BTISNet Bioinformatics National symposium; NBRI & CIMAP, Lucknow, February 2, 2013.
  3. Divya N. Nair “Plant lectins and the specific glycan interaction”. Gujarat Science Congress 2012; M.S. University Baroda, February 26th,2012.Kunal S, Pappachan A, Desh Deepak Singh. Isolation, purification and characterization of kunitz type serine protease inhibitor with lectin like activity from Solanum tuberosum; 42nd National Seminar on Crystallography and International Workshop on Application of X-ray Diffraction for Drug Discovery; JNU, New Delhi. November 21-23, 2013.
  4. Radhey Shyam Kaushal. Kinetoplastid Membrane Protein-11 (KMP-11), a potential drug target molecule from Leishmania species. 42nd National Seminar on Crystallography and International Workshop on Application of X-ray Diffraction for Drug Discovery; JNU, New Delhi. November 21-23, 2013.